Bias corrected deviation of one motif
Usage
computeAccDeviation(
motif,
ins,
tf_bindsites,
gcfreqs,
binIns,
enhancer = NULL,
ignoreStrand = TRUE
)
Arguments
- motif
Motif name.
- ins
A GRanges of insertion sites.
- tf_bindsites
A GRangesList of binding site positions.
- gcfreqs
A list of GC bin frequency tables.
- binIns
GC bin densities of the sample.
- enhancer
Optional GRanges restricting the sites.
- ignoreStrand
If TRUE, strand information is ignored.
Value
A data.table with the deviation and the expected
deviation.
Examples
if (FALSE) { # \dontrun{
computeAccDeviation("CTCF", ins, tf_bindsites, gcfreqs, binIns)
} # }