Expected cut propensity along a set of binding sites — kmerBiasProfile • chromTFR

Expected cut propensity along a set of binding sites

Usage

kmerBiasProfile(tfbs, genome, bias, k = 6L, max.sites = 25000)

Arguments

tfbs: A GRanges of binding sites, prepared with prepareTFBS.
genome: A BSgenome object.
bias: Named k-mer weights from computeKmerBias.
k: Length of the k-mer.
max.sites: Number of binding sites drawn for the estimate.

Value

A data.table with the columns x and w.

Examples

if (FALSE) { # \dontrun{
kmerBiasProfile(tfbs, Hsapiens, bias)
} # }