Per sample reader for runChromTFR — makeInsertionReader • chromTFR

Per sample reader for runChromTFR

Usage

makeInsertionReader(
  dsa,
  sampleIds,
  regions = NULL,
  shift = c(4L, -5L),
  normalize = TRUE
)

Arguments

dsa: A DsATAC object.
sampleIds: A character vector of sample identifiers.
regions: Optional GRanges restricting the insertions.
shift: Offsets applied to the forward and reverse fragment ends.
normalize: If TRUE, counts are scaled to insertions per million.

Value

A function of a single sample index.

Examples

if (FALSE) { # \dontrun{
reader <- makeInsertionReader(dsa, getAccSamples(dsa))
} # }