Extract deviation Z-scores from methylTFRdeviations object.
Usage
# S4 method for class 'methylTFRdeviations'
deviationZScores(x)Examples
# Load the data
load(system.file("extdata", "tc_mem.rda", package = "methylTFR"))
# Get deviation Z-scores
deviationZScores(tc_mem)
#> Tc-Mem_OP_S5_Long_D1.bedGraph.bed
#> FOXF2 0.09952745
#> FOXD1 -3.37320266
#> IRF2 -8.81278614
#> MZF1(var.2) -7.93557376
#> MAX::MYC -6.92619776
#> PPARG -8.53704072
#> PAX6 0.15511514
#> PBX1 -0.44512022
#> RORA -12.11118430
#> RORA(var.2) -8.16113084
#> Tc-Mem_OP_S4_Long_D60.bedGraph.bed
#> FOXF2 0.05099083
#> FOXD1 -2.15313860
#> IRF2 -10.60528416
#> MZF1(var.2) -4.63134222
#> MAX::MYC -6.83283764
#> PPARG -4.52570166
#> PAX6 -1.98421035
#> PBX1 -1.55884533
#> RORA -7.95318382
#> RORA(var.2) -4.79944817
#> Tc-Mem_OP_S4_Long_D28.bedGraph.bed
#> FOXF2 -0.2966509
#> FOXD1 -1.0020442
#> IRF2 -9.5352471
#> MZF1(var.2) -4.2448393
#> MAX::MYC -6.9823143
#> PPARG -8.1898404
#> PAX6 -1.9610534
#> PBX1 -0.2753343
#> RORA -16.2778446
#> RORA(var.2) -3.1748887
#> Tc-Mem_OP_S4_Long_D1.bedGraph.bed Tc-Mem_OP_S3_High_D1.bedGraph.bed
#> FOXF2 -0.1072407 -6.671444e-04
#> FOXD1 -2.5315756 -3.059927e+00
#> IRF2 -7.1715554 -1.072176e+01
#> MZF1(var.2) -5.4315341 -4.469167e+00
#> MAX::MYC -6.1736131 -8.222368e+00
#> PPARG -6.7031345 -9.327438e+00
#> PAX6 -0.2066197 1.935868e-01
#> PBX1 -1.3246348 -2.053792e+00
#> RORA -11.4897174 -2.082799e+01
#> RORA(var.2) -3.8143368 -2.919634e+00