Extract bias corrected deviations from methylTFRdeviations object.
Usage
# S4 method for class 'methylTFRdeviations'
deviations(x)Examples
# Load the data
load(system.file("extdata", "tc_mem.rda", package = "methylTFR"))
# Get deviations
deviations(tc_mem)
#> Tc-Mem_OP_S5_Long_D1.bedGraph.bed
#> FOXF2 0.002128691
#> FOXD1 -0.068104043
#> IRF2 -0.099855724
#> MZF1(var.2) -0.091823810
#> MAX::MYC -0.207980740
#> PPARG -0.044047525
#> PAX6 0.002634395
#> PBX1 -0.008565336
#> RORA -0.058758695
#> RORA(var.2) -0.078493539
#> Tc-Mem_OP_S4_Long_D60.bedGraph.bed
#> FOXF2 0.001343341
#> FOXD1 -0.042951266
#> IRF2 -0.122406382
#> MZF1(var.2) -0.068451047
#> MAX::MYC -0.224920075
#> PPARG -0.041315791
#> PAX6 -0.031466427
#> PBX1 -0.028415769
#> RORA -0.040940878
#> RORA(var.2) -0.058993445
#> Tc-Mem_OP_S4_Long_D28.bedGraph.bed
#> FOXF2 -0.007352279
#> FOXD1 -0.025370314
#> IRF2 -0.114251930
#> MZF1(var.2) -0.070261983
#> MAX::MYC -0.231861827
#> PPARG -0.078707801
#> PAX6 -0.032462078
#> PBX1 -0.008190409
#> RORA -0.099863662
#> RORA(var.2) -0.043749070
#> Tc-Mem_OP_S4_Long_D1.bedGraph.bed Tc-Mem_OP_S3_High_D1.bedGraph.bed
#> FOXF2 -0.002867150 -1.509199e-05
#> FOXD1 -0.053054377 -6.417042e-02
#> IRF2 -0.090927407 -1.067922e-01
#> MZF1(var.2) -0.077510986 -6.353562e-02
#> MAX::MYC -0.201681226 -2.157996e-01
#> PPARG -0.060603258 -6.165151e-02
#> PAX6 -0.003925531 2.580385e-03
#> PBX1 -0.024302408 -3.844766e-02
#> RORA -0.071378314 -8.644321e-02
#> RORA(var.2) -0.040281824 -3.292322e-02