exportCountTracks-methods

export count data as genome tracks (e.g. for visualization in the browser)

# S4 method for DsATAC
exportCountTracks(
  .object,
  type,
  outDir,
  formats = c("bed", "igv"),
  groupBy = NULL
)

Arguments

.object

DsATAC object

type

character string specifying the region type

outDir

output directory. Must be existing.

formats

browser format. Currently only bed and "igv" are supported

groupBy

a column in the sample annotation table to group by (the mean will be computed)

Value

nothing of particular interest

Author

Fabian Mueller