Filter for Recurrent Allele-Specific Chromatin Events

Identifies SNPs that are significantly imbalanced (ASC) in a minimum number of independent donors.

filterForRecurrence(stats_dt, minDonors = 3, fdrCutoff = 0.05)

Arguments

stats_dt

A data.table containing statistics (output of calcASCStatistics).

minDonors

Integer. Minimum number of independent donors required (default 3).

fdrCutoff

Numeric. FDR threshold to define significance (default 0.05).

Value

A data.table containing only the recurrent ASC events.