Compute chromVar deviations

# S4 method for class 'DsATAC'
getChromVarDev(.object, type, motifs = "jaspar2018")

Arguments

.object

DsATAC object

type

character string specifying the region type

motifs

either a character string (currently only "jaspar2018" and sets contained in chromVARmotifs ("homer", "encode", "cisbp") are supported) or an object containing PWMs that can be used by motifmatchr::matchMotifs (such as an PFMatrixList or PWMatrixList object)

Value

Deviations object as returned by chromVAR::computeDeviations

Author

Fabian Mueller