Manhattan-style plot of ASC significance along the genome — plotASCManhattan • ChrAccR

Manhattan-style plot of ASC significance along the genome

plotASCManhattan(
  dsObj,
  stats = NULL,
  sample = NULL,
  minCoverage = 10,
  sigCut = 0.1
)

Arguments

dsObj: A DsASC object (provides snp coordinates).
stats: Optional output of calcASCStatistics. If NULL it is computed with the given minCoverage.
sample: Optional single sampleId to restrict the plot to. If NULL, the most significant observation per SNP is shown.
minCoverage: Passed to calcASCStatistics if stats is NULL (default 10).
sigCut: FDR threshold for the significance line (default 0.1).

Value

A ggplot object.